Evidence Insight

gene-database

92100Total Score

Core Capability

87 / 100

Functional Suitability

11 / 12

Reliability

10 / 12

Performance & Context

8 / 8

Agent Usability

14 / 16

Human Usability

8 / 8

Security

9 / 12

Maintainability

10 / 12

Agent-Specific

17 / 20

Medical Task

20 / 20 Passed

100You have a gene symbol (e.g., BRCA1) and need the correct NCBI Gene ID for a specific organism

4/4

97You have an NCBI Gene ID and need consolidated metadata (aliases, RefSeq accessions, genomic location, GO, literature links)

4/4

95Symbol/name search with organism scoping using E-utilities (ESearch)

4/4

94Gene record retrieval by ID using E-utilities (EFetch/ESummary) in JSON/XML/text-oriented outputs

4/4

94End-to-end case for Symbol/name search with organism scoping using E-utilities (ESearch)

4/4

Veto GatesRequired pass for any deployment consideration

Skill Veto✓ All 4 gates passed

✓

Operational Stability

System remains stable across varied inputs and edge cases

PASS

✓

Structural Consistency

Output structure conforms to expected skill contract format

PASS

✓

Result Determinism

Equivalent inputs produce semantically equivalent outputs

PASS

✓

System Security

No prompt injection, data leakage, or unsafe tool use detected

PASS

Research Veto✅ PASS — Applicable

Dimension	Result	Detail
Scientific Integrity	PASS	The legacy audit did not indicate that retrieval outputs were presented as unsupported findings.
Practice Boundaries	PASS	The legacy review kept this workflow on the evidence-access side of the boundary, not the advice-giving side.
Methodological Ground	PASS	No methodological-grounding issue was recorded for gene-database in the archived evaluation.
Code Usability	PASS	The packaged retrieval surface remained understandable at the command and parameter level in the archived review.

Core Capability87 / 100 — 8 Categories

Functional Suitability

The archived evaluation left some headroom for gene-database under functional suitability.

11 / 12

92%

Reliability

The archived evaluation left some headroom for gene-database under reliability.

10 / 12

83%

Performance & Context

No point loss was recorded for performance context in the legacy audit.

8 / 8

100%

Agent Usability

The archived evaluation left some headroom for gene-database under agent usability.

14 / 16

88%

Human Usability

The legacy audit gave full marks to human usability for this package.

8 / 8

100%

Security

The legacy audit deducted points for gene-database in security.

9 / 12

75%

Maintainability

The legacy audit deducted points for gene-database in maintainability.

10 / 12

83%

Agent-Specific

The archived evaluation left some headroom for gene-database under agent specific.

17 / 20

85%

Core Capability Total87 / 100

Medical TaskExecution Average: 96 / 100 — Assertions: 20/20 Passed

100

Canonical

You have a gene symbol (e.g., BRCA1) and need the correct NCBI Gene ID for a specific organism

4/4 ✓

Variant A

You have an NCBI Gene ID and need consolidated metadata (aliases, RefSeq accessions, genomic location, GO, literature links)

4/4 ✓

Edge

Symbol/name search with organism scoping using E-utilities (ESearch)

4/4 ✓

Variant B

Gene record retrieval by ID using E-utilities (EFetch/ESummary) in JSON/XML/text-oriented outputs

4/4 ✓

Stress

End-to-end case for Symbol/name search with organism scoping using E-utilities (ESearch)

4/4 ✓

100

Canonical✅ Pass

You have a gene symbol (e.g., BRCA1) and need the correct NCBI Gene ID for a specific organism

The archived evaluation treated You have a gene symbol (e.g., BRCA1) and need the correct NCBI Gene... as a clean in-scope run.

Basic 38/40|Specialized 60/60|Total 100/100

✅A1The gene-database output structure matches the documented deliverable

✅A2The script execution path completed successfully for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Variant A✅ Pass

You have an NCBI Gene ID and need consolidated metadata (aliases, RefSeq accessions, genomic location, GO, literature links)

The You have an NCBI Gene ID and need consolidated metadata (aliases,... scenario completed within the documented Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you... boundary.

Basic 36/40|Specialized 60/60|Total 97/100

✅A1The gene-database output structure matches the documented deliverable

✅A2The script execution path completed successfully for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Edge✅ Pass

Symbol/name search with organism scoping using E-utilities (ESearch)

The Symbol/name search with organism scoping using E-utilities (ESearch) scenario completed within the documented Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you... boundary.

Basic 35/40|Specialized 60/60|Total 95/100

✅A1The gene-database output structure matches the documented deliverable

✅A2The script execution path completed successfully for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Variant B✅ Pass

Gene record retrieval by ID using E-utilities (EFetch/ESummary) in JSON/XML/text-oriented outputs

Gene record retrieval by ID using E-utilities (EFetch/ESummary) in... remained well-aligned with the documented contract in the preserved audit.

Basic 34/40|Specialized 60/60|Total 94/100

✅A1The gene-database output structure matches the documented deliverable

✅A2The script execution path completed successfully for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Stress✅ Pass

End-to-end case for Symbol/name search with organism scoping using E-utilities (ESearch)

The End-to-end case for Symbol/name search with organism scoping using... scenario completed within the documented Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you... boundary.

Basic 31/40|Specialized 60/60|Total 94/100

✅A1The gene-database output structure matches the documented deliverable

✅A2The script execution path completed successfully for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Medical Task Total96 / 100

Key Strengths

Primary routing is Evidence Insight with execution mode B
Static quality score is 87/100 and dynamic average is 83.6/100
Assertions and command execution outcomes are recorded per input for human review
Execution verification summary: Script verification 3/3; adjustment=5. batch_gene_lookup.py: OK; fetch_gene_data.py: OK; query_gene.py: OK