Evidence Insight

string-database

Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protein set.

88100Total Score

Core Capability

82 / 100

Functional Suitability

10 / 12

Reliability

9 / 12

Performance & Context

8 / 8

Agent Usability

13 / 16

Human Usability

8 / 8

Security

9 / 12

Maintainability

9 / 12

Agent-Specific

16 / 20

Medical Task

20 / 20 Passed

96You have gene symbols (e.g., TP53) and need to resolve them to STRING protein identifiers for downstream analysis

4/4

92You want to retrieve a protein–protein interaction (PPI) network (functional/physical) with confidence scores for one or more proteins

4/4

90ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

4/4

90Network Retrieval: Fetch interaction edges with confidence scores from STRING

4/4

90End-to-end case for ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

4/4

Veto GatesRequired pass for any deployment consideration

Skill Veto✓ All 4 gates passed

✓

Operational Stability

System remains stable across varied inputs and edge cases

PASS

✓

Structural Consistency

Output structure conforms to expected skill contract format

PASS

✓

Result Determinism

Equivalent inputs produce semantically equivalent outputs

PASS

✓

System Security

No prompt injection, data leakage, or unsafe tool use detected

PASS

Research Veto✅ PASS — Applicable

Dimension	Result	Detail
Scientific Integrity	PASS	The archived evaluation kept the skill tied to retrieved records or indexed source material rather than invented scientific claims.
Practice Boundaries	PASS	The package stayed in retrieval, extraction, or evidence-organization scope rather than drifting into unsupported interpretation.
Methodological Ground	PASS	The legacy audit preserved a method-grounded interpretation of the Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protein set workflow.
Code Usability	PASS	The packaged retrieval surface remained understandable at the command and parameter level in the archived review.

Core Capability82 / 100 — 8 Categories

Functional Suitability

Functional suitability was softened by the legacy issue 'Improve stress-case output rigor'. Stress and boundary scenarios show weaker consistency

10 / 12

83%

Reliability

The archived deduction in reliability traces back to: Improve stress-case output rigor. Stress and boundary scenarios show weaker consistency

9 / 12

75%

Performance & Context

No point loss was recorded for performance context in the legacy audit.

8 / 8

100%

Agent Usability

The archived evaluation left some headroom for string-database under agent usability.

13 / 16

81%

Human Usability

The legacy audit gave full marks to human usability for this package.

8 / 8

100%

Security

The archived evaluation left some headroom for string-database under security.

9 / 12

75%

Maintainability

The legacy audit deducted points for string-database in maintainability.

9 / 12

75%

Agent-Specific

The archived deduction in agent specific traces back to: Improve stress-case output rigor. Stress and boundary scenarios show weaker consistency

16 / 20

80%

Core Capability Total82 / 100

Medical TaskExecution Average: 91.6 / 100 — Assertions: 20/20 Passed

Canonical

You have gene symbols (e.g., TP53) and need to resolve them to STRING protein identifiers for downstream analysis

4/4 ✓

Variant A

You want to retrieve a protein–protein interaction (PPI) network (functional/physical) with confidence scores for one or more proteins

4/4 ✓

Edge

ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

4/4 ✓

Variant B

Network Retrieval: Fetch interaction edges with confidence scores from STRING

4/4 ✓

Stress

End-to-end case for ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

4/4 ✓

Canonical✅ Pass

You have gene symbols (e.g., TP53) and need to resolve them to STRING protein identifiers for downstream analysis

You have gene symbols (e.g., TP53) and need to resolve them to... was evaluated as a bounded documentation path, not as a runnable script workflow.

Basic 35/40|Specialized 60/60|Total 96/100

✅A1The string-database output structure matches the documented deliverable

✅A2The instruction path remains actionable for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Variant A✅ Pass

You want to retrieve a protein–protein interaction (PPI) network (functional/physical) with confidence scores for one or more proteins

The archived run for You want to retrieve a protein–protein interaction (PPI) network... remained guidance-driven rather than command-driven.

Basic 33/40|Specialized 59/60|Total 92/100

✅A1The string-database output structure matches the documented deliverable

✅A2The instruction path remains actionable for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Edge✅ Pass

ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

ID Mapping: Convert gene/protein names to STRING identifiers for a... was evaluated as a bounded documentation path, not as a runnable script workflow.

Basic 32/40|Specialized 58/60|Total 90/100

✅A1The string-database output structure matches the documented deliverable

✅A2The instruction path remains actionable for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Variant B✅ Pass

Network Retrieval: Fetch interaction edges with confidence scores from STRING

Network Retrieval: Fetch interaction edges with confidence scores... was evaluated as a bounded documentation path, not as a runnable script workflow.

Basic 31/40|Specialized 59/60|Total 90/100

✅A1The string-database output structure matches the documented deliverable

✅A2The instruction path remains actionable for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Stress✅ Pass

End-to-end case for ID Mapping: Convert gene/protein names to STRING identifiers for a given organism

End-to-end case for ID Mapping: Convert gene/protein names to... was evaluated as a bounded documentation path, not as a runnable script workflow.

Basic 28/40|Specialized 60/60|Total 90/100

✅A1The string-database output structure matches the documented deliverable

✅A2The instruction path remains actionable for the documented case

✅A3The output stays fully within the documented skill boundary

✅A4The response quality is acceptable for the documented path

Pass rate: 4 / 4

Medical Task Total91.6 / 100

Key Strengths

Primary routing is Evidence Insight with execution mode B
Static quality score is 82/100 and dynamic average is 78.6/100
Assertions and command execution outcomes are recorded per input for human review
Execution verification summary: Script verification 2/2; adjustment=5. string_api.py: OK; __init__.py: OK