Data Analysis

volcano-plot-script

86100Total Score

Core Capability

88 / 100

Functional Suitability

11 / 12

Reliability

10 / 12

Performance & Context

8 / 8

Agent Usability

14 / 16

Human Usability

8 / 8

Security

10 / 12

Maintainability

10 / 12

Agent-Specific

17 / 20

Medical Task

17 / 20 Passed

100Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis

4/4

100Use this skill for data analysis tasks that require explicit assumptions, bounded scope, and a reproducible output format

4/4

92Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis

4/4

65Packaged executable path(s): scripts/main.py

3/4

65End-to-end case for Scope-focused workflow aligned to: Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis

2/4

Veto GatesRequired pass for any deployment consideration

Skill Veto✓ All 4 gates passed

✓

Operational Stability

System remains stable across varied inputs and edge cases

PASS

✓

Structural Consistency

Output structure conforms to expected skill contract format

PASS

✓

Result Determinism

Equivalent inputs produce semantically equivalent outputs

PASS

✓

System Security

No prompt injection, data leakage, or unsafe tool use detected

PASS

Research Veto✅ PASS — Applicable

Dimension	Result	Detail
Scientific Integrity	PASS	The archived review kept this workflow anchored to supplied data fields and observable execution behavior, not fabricated results.
Practice Boundaries	PASS	Practice boundaries held because the package remained focused on Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis... rather than overclaiming what the records supported.
Methodological Ground	PASS	The archived evaluation treated the workflow as method-linked rather than ad hoc.
Code Usability	PASS	Code usability passed because the package still exposed a reviewable execution surface for its documented workflow.

Core Capability88 / 100 — 8 Categories

Functional Suitability

Related legacy finding for volcano-plot-script: Improve stress-case output rigor. Stress and boundary scenarios show weaker consistency

11 / 12

92%

Reliability

The archived deduction in reliability traces back to: Improve stress-case output rigor. Stress and boundary scenarios show weaker consistency

10 / 12

83%

Performance & Context

The legacy audit gave full marks to performance context for this package.

8 / 8

100%

Agent Usability

The archived review left some headroom in how quickly an agent can lock onto the intended analysis path.

14 / 16

88%

Human Usability

The legacy audit gave full marks to human usability for this package.

8 / 8

100%

Security

The packaged workflow stayed safe overall, with only a small remaining deduction around boundary signaling.

10 / 12

83%

Maintainability

The archived review treated the package as maintainable, while still preserving some room for cleanup.

10 / 12

83%

Agent-Specific

Agent specific was softened by the legacy issue 'Stabilize executable path and fallback behavior'. Some inputs only reached PARTIAL due to execution gaps or weak boundary handling

17 / 20

85%

Core Capability Total88 / 100

Medical TaskExecution Average: 84.4 / 100 — Assertions: 17/20 Passed

100

Canonical

Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis

4/4 ✓

100

Variant A

Use this skill for data analysis tasks that require explicit assumptions, bounded scope, and a reproducible output format

4/4 ✓

Edge

4/4 ✓

Variant B

Packaged executable path(s): scripts/main.py

3/4 ⚠

Stress

End-to-end case for Scope-focused workflow aligned to: Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs fold-change scatter plots, publication-ready figures for bioinformatics analysis

2/4 ⚠

100

Canonical✅ Pass

The Generate R/Python code for volcano plots from DEG (Differentially... scenario completed within the documented Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis... boundary.

Basic 40/40|Specialized 60/60|Total 100/100

✅A1The volcano-plot-script output structure covers required deliverable blocks

✅A2Script execution path is available (command exit code is 0)

✅A3The output stays within declared skill scope and target objective

✅A4Required research safety/boundary guidance is present without overclaims

Pass rate: 4 / 4

100

Variant A✅ Pass

Use this skill for data analysis tasks that require explicit assumptions, bounded scope, and a reproducible output format

The Use this skill for data analysis tasks that require explicit... scenario completed within the documented Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis... boundary.

Basic 40/40|Specialized 60/60|Total 100/100

✅A1The volcano-plot-script output structure covers required deliverable blocks

✅A2Script execution path is available (command exit code is 0)

✅A3The output stays within declared skill scope and target objective

✅A4Required research safety/boundary guidance is present without overclaims

Pass rate: 4 / 4

Edge✅ Pass

The Generate R/Python code for volcano plots from DEG (Differentially... path verified the packaged helper command without exposing a deeper execution issue.

Basic 36/40|Specialized 56/60|Total 92/100

✅A1The volcano-plot-script output structure covers required deliverable blocks

✅A2Script execution path is available (command exit code is 0)

✅A3The output stays within declared skill scope and target objective

✅A4Required research safety/boundary guidance is present without overclaims

Pass rate: 4 / 4

Variant B⚠️ Warning

Packaged executable path(s): scripts/main.py

This variant b case was mostly intact, but the archived review centered its concern on: Script execution path is available (command exit code is 0).

Basic 26/40|Specialized 39/60|Total 65/100

✅A1The volcano-plot-script output structure covers required deliverable blocks

❌A2Script execution path is available (command exit code is 0)

✅A3The output stays within declared skill scope and target objective

✅A4Required research safety/boundary guidance is present without overclaims

Pass rate: 3 / 4

Stress⚠️ Warning

The main issue in this stress run was: The output stays within declared skill scope and target objective.

Basic 25/40|Specialized 40/60|Total 65/100

✅A1The volcano-plot-script output structure covers required deliverable blocks

✅A2Script execution path is available (command exit code is 0)

❌A3The output stays within declared skill scope and target objective

❌A4Required research safety/boundary guidance is present without overclaims

Pass rate: 2 / 4

Medical Task Total84.4 / 100

Key Strengths

Primary routing is Data Analysis with execution mode B
Static quality score is 88/100 and dynamic average is 84.4/100
Assertions and command execution outcomes are recorded per input for human review