Data Analysis
cobrapy
86100Total Score
Core Capability
85 / 100
Functional Suitability
11 / 12
Reliability
9 / 12
Performance & Context
7 / 8
Agent Usability
14 / 16
Human Usability
8 / 8
Security
11 / 12
Maintainability
9 / 12
Agent-Specific
16 / 20
Medical Task
20 / 20 Passed
91Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4
87Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4
85Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4
85Documentation-first workflow with no packaged script requirement
4/4
85End-to-end case for Scope-focused workflow aligned to: Constraint-based reconstruction and analysis (COBRA) for metabolic models; use when you need to simulate growth/production, analyze flux ranges, or run knockout and medium studies from SBML/JSON/YAML models
4/4
Veto GatesRequired pass for any deployment consideration
Skill Veto✓ All 4 gates passed
✓
Operational Stability
System remains stable across varied inputs and edge cases
PASS✓
Structural Consistency
Output structure conforms to expected skill contract format
PASS✓
Result Determinism
Equivalent inputs produce semantically equivalent outputs
PASS✓
System Security
No prompt injection, data leakage, or unsafe tool use detected
PASSResearch Veto✅ PASS — Applicable
| Dimension | Result | Detail |
|---|---|---|
| Scientific Integrity | PASS | The archived review kept this workflow anchored to supplied data fields and observable execution behavior, not fabricated results. |
| Practice Boundaries | PASS | Practice boundaries held because the package remained focused on Constraint-based reconstruction and analysis (COBRA) for metabolic models rather than overclaiming what the records supported. |
| Methodological Ground | PASS | The archived evaluation treated the workflow as method-linked rather than ad hoc. |
| Code Usability | PASS | Code usability passed because the package still exposed a reviewable execution surface for its documented workflow. |
Core Capability85 / 100 — 8 Categories
Functional Suitability
Functional suitability was softened by the legacy issue 'Improve stress-case output rigor'. Stress and boundary scenarios show weaker consistency
11 / 12
92%
Reliability
Reliability was softened by the legacy issue 'Improve stress-case output rigor'. Stress and boundary scenarios show weaker consistency
9 / 12
75%
Performance & Context
The archived review left minor headroom in how this analysis workflow scales across heavier contexts.
7 / 8
88%
Agent Usability
The packaged analysis path is understandable, though the archived score suggests slightly clearer routing would help.
14 / 16
88%
Human Usability
The legacy audit gave full marks to human usability for this package.
8 / 8
100%
Security
The packaged workflow stayed safe overall, with only a small remaining deduction around boundary signaling.
11 / 12
92%
Maintainability
Maintainability stayed solid, with only limited room to simplify scripts, dependencies, or packaging structure.
9 / 12
75%
Agent-Specific
Agent specific was softened by the legacy issue 'Improve stress-case output rigor'. Stress and boundary scenarios show weaker consistency
16 / 20
80%
Core Capability Total85 / 100
Medical TaskExecution Average: 86.6 / 100 — Assertions: 20/20 Passed
91
Canonical
Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4 ✓
87
Variant A
Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4 ✓
85
Edge
Constraint-based reconstruction and analysis (COBRA) for metabolic models
4/4 ✓
85
Variant B
Documentation-first workflow with no packaged script requirement
4/4 ✓
85
Stress
End-to-end case for Scope-focused workflow aligned to: Constraint-based reconstruction and analysis (COBRA) for metabolic models; use when you need to simulate growth/production, analyze flux ranges, or run knockout and medium studies from SBML/JSON/YAML models
4/4 ✓
91
Canonical✅ Pass
Constraint-based reconstruction and analysis (COBRA) for metabolic models
The archived run treated Constraint-based reconstruction and analysis (COBRA) for metabolic... as a bounded analysis workflow rather than a purely narrative instruction path.
Basic 36/40|Specialized 55/60|Total 91/100
✅A1The cobrapy output structure matches the documented deliverable
✅A2The instruction path remains actionable for the documented case
✅A3The output stays fully within the documented skill boundary
✅A4The response quality is acceptable for the documented path
Pass rate: 4 / 4
87
Variant A✅ Pass
Constraint-based reconstruction and analysis (COBRA) for metabolic models
The archived run treated Constraint-based reconstruction and analysis (COBRA) for metabolic... as a bounded analysis workflow rather than a purely narrative instruction path.
Basic 34/40|Specialized 53/60|Total 87/100
✅A1The cobrapy output structure matches the documented deliverable
✅A2The instruction path remains actionable for the documented case
✅A3The output stays fully within the documented skill boundary
✅A4The response quality is acceptable for the documented path
Pass rate: 4 / 4
85
Edge✅ Pass
Constraint-based reconstruction and analysis (COBRA) for metabolic models
This edge case stayed within the packaged analysis boundary and kept a reviewable task contract.
Basic 33/40|Specialized 52/60|Total 85/100
✅A1The cobrapy output structure matches the documented deliverable
✅A2The instruction path remains actionable for the documented case
✅A3The output stays fully within the documented skill boundary
✅A4The response quality is acceptable for the documented path
Pass rate: 4 / 4
85
Variant B✅ Pass
Documentation-first workflow with no packaged script requirement
The archived run treated Documentation-first workflow with no packaged script requirement as a bounded analysis workflow rather than a purely narrative instruction path.
Basic 32/40|Specialized 53/60|Total 85/100
✅A1The cobrapy output structure matches the documented deliverable
✅A2The instruction path remains actionable for the documented case
✅A3The output stays fully within the documented skill boundary
✅A4The response quality is acceptable for the documented path
Pass rate: 4 / 4
85
Stress✅ Pass
End-to-end case for Scope-focused workflow aligned to: Constraint-based reconstruction and analysis (COBRA) for metabolic models; use when you need to simulate growth/production, analyze flux ranges, or run knockout and medium studies from SBML/JSON/YAML models
Constraint-based reconstruction and analysis (COBRA) for metabolic models remained tied to the documented analysis contract even when the preserved evidence centered on instructions instead of a full rerun.
Basic 29/40|Specialized 56/60|Total 85/100
✅A1The cobrapy output structure matches the documented deliverable
✅A2The instruction path remains actionable for the documented case
✅A3The output stays fully within the documented skill boundary
✅A4The response quality is acceptable for the documented path
Pass rate: 4 / 4
Medical Task Total86.6 / 100
Key Strengths
- Primary routing is Data Analysis with execution mode A
- Static quality score is 85/100 and dynamic average is 78.6/100
- Assertions and command execution outcomes are recorded per input for human review
- Execution verification summary: No script verification was applicable